PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0341s0041.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 277aa    MW: 30732.3 Da    PI: 10.2823
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0341s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-173495257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+++t+eql +Le+lF+    r+p+ +++  +A++l     ++ ++V++WFqNr+ +e++
  Kalax.0341s0041.1.p 34 STRWNPTREQLSQLESLFNGqgIRTPTPAQISSIARRLlaygPIKGKNVFYWFQNRKGRERR 95
                         58*****************6568*************************************97 PP
2Wus_type_Homeobox91.86.4e-303396264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ++tRW+Pt eQ+  Le+l++ +G+rtP+ ++i+ i+++L +yG i++kNVfyWFQNrk Rer++
  Kalax.0341s0041.1.p 33 SSTRWNPTREQLSQLESLFNgQGIRTPTPAQISSIARRLLAYGPIKGKNVFYWFQNRKGRERRQ 96
                         689*****************9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-81596IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1126100IPR009057Homeodomain-like
PROSITE profilePS5007112.0343096IPR001356Homeobox domain
SMARTSM003893.3E-632100IPR001356Homeobox domain
PfamPF000463.9E-153595IPR001356Homeobox domain
CDDcd000862.76E-73597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLSKPYKTAN PPSDSLTSTN VHHPKMDPIS GRSSTRWNPT REQLSQLESL FNGQGIRTPT  60
PAQISSIARR LLAYGPIKGK NVFYWFQNRK GRERRQKRKM ERQQMSANTH NNNNSLNNKN  120
NTVFNNLINN NNTENVAVSG GYFNRFYPPP PSISPALSLT TGRPHSLFQT TPLSVGNLPY  180
YAAQPRFGFY PHCPRTDLPS HLNSPMLFHP RNVISFATQS SEVVNAEVND ALFGEGSGSR  240
VTPATLDLFP VHPTGILQER DDGGQSDGDS NLVIID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.15e-18WUSCHEL related homeobox 2