PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0343s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 346aa MW: 39493.3 Da PI: 6.4551

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0343s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.8	4e-25	34	113	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li++r e+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k+ykk+k++ +++y+++le Kalax.0343s0024.1.p 34 WVQEETRCLINFRWEVDSLFNTSKSNKHLWEQISIKMRDKGFDRSPTMCTDKWRNLLKEYKKLKHHHATT-----AKISYYKDLE 113 ******************************************************************9973.....4577999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.747	26	90	IPR017877	Myb-like domain
CDD	cd12203	1.10E-25	32	97	No hit	No description
Pfam	PF13837	2.7E-18	33	114	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MLMEGAVSLA PAHQLLLGES SGDDKAPKKR AETWVQEETR CLINFRWEVD SLFNTSKSNK 60 HLWEQISIKM RDKGFDRSPT MCTDKWRNLL KEYKKLKHHH ATTAKISYYK DLEDLMRDRT 120 SHTNAPLPSN KLLDSSSYIH FSHKAIEDAT LAFGHSEAGG RAKVNPESRL DHHDSDPLAI 180 NTGETVVPNG VPPWNWRETA GSGEEQQTYD GRVISVKWGE YTRRIGIDGT TDAVKEAVKS 240 AFRLRTKRAF WLEDEYQIIR SIDRDMPLGN YTLHLDEGIS IKVCLFDDAG RITEEKTLYT 300 EDDFREYLQR RGLTGLRELN GYRSIDTLDD LGTGEVYHGV RMIGE*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MLMEGAVSLA PAHQLLLGES SGDDKAPKKR AETWVQEETR CLINFRWEVD SLFNTSKSNK  60
HLWEQISIKM RDKGFDRSPT MCTDKWRNLL KEYKKLKHHH ATTAKISYYK DLEDLMRDRT  120
SHTNAPLPSN KLLDSSSYIH FSHKAIEDAT LAFGHSEAGG RAKVNPESRL DHHDSDPLAI  180
NTGETVVPNG VPPWNWRETA GSGEEQQTYD GRVISVKWGE YTRRIGIDGT TDAVKEAVKS  240
AFRLRTKRAF WLEDEYQIIR SIDRDMPLGN YTLHLDEGIS IKVCLFDDAG RITEEKTLYT  300
EDDFREYLQR RGLTGLRELN GYRSIDTLDD LGTGEVYHGV RMIGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-39	28	111	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250844.1	1e-163	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-138	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U7ZBE5	1e-162	A0A1U7ZBE5_NELNU; trihelix transcription factor GT-1
STRING	XP_010250844.1	1e-163	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-129	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0343s0024.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]