PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0345s0032.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 254aa MW: 26569.5 Da PI: 10.2454

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0345s0032.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	6.1e-39	24	119	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++ +as+ a++ +ss++ g+a Kalax.0345s0032.2.p 24 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSILAATGSGTVPASALaAAGAAVSSQG----GRA 109 789*************************************************************9999988865555555554....222 PP TCP 91 aksaakskks 100 + +a ++++ Kalax.0345s0032.2.p 110 SVAAGLQHQQ 119 2222211111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-30	29	117	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.621	30	84	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGGTKPSDFH TAQKDVNNVV KKLAPKRSSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE 60 LGHKSDGETI QWLLQQAEPS ILAATGSGTV PASALAAAGA AVSSQGGRAS VAAGLQHQQK 120 SNEPGGSGSR SGFGLGPSLW SHHHHHFGFP LTPPPPQSSS PSPPSASAAA SPESLNYLSK 180 LGLSGFDFTH ANPGQISFTS ILNGDQPLPG LELGLSQDAH SQHQPMSHIF HQMIHQQQEA 240 AVKDESGGSG QSR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304347.2	7e-73	transcription factor TCP20-like
Refseq	XP_028218369.1	7e-73	transcription factor TCP20-like
Swissprot	Q9LSD5	6e-47	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A445FED1	2e-71	A0A445FED1_GLYSO; Transcription factor TCP20
TrEMBL	I1N7U7	2e-71	I1N7U7_SOYBN; Uncharacterized protein
STRING	GLYMA19G26560.1	3e-72	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0345s0032.2.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]