PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0348s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 138aa    MW: 15687.8 Da    PI: 8.4641
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0348s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB164.81.2e-5125120297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          + q+r+lPianv+rimk++lP nakisk+aket+qecv+efisfvt+easdkc++e+rkt+ngdd++walatlGf++yv p++ yl+kyr
  Kalax.0348s0014.1.p  25 KGQERLLPIANVGRIMKEILPPNAKISKEAKETLQECVTEFISFVTGEASDKCKKERRKTLNGDDICWALATLGFDNYVLPMRRYLSKYR 114
                          6799************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+egek
  Kalax.0348s0014.1.p 115 EMEGEK 120
                          ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-4823125IPR009072Histone-fold
SuperFamilySSF471132.17E-3727122IPR009072Histone-fold
PfamPF008086.3E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-165876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-167795No hitNo description
PRINTSPR006151.6E-1696114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MVDNGEPSNT NKNPRREEAV EYTIKGQERL LPIANVGRIM KEILPPNAKI SKEAKETLQE  60
CVTEFISFVT GEASDKCKKE RRKTLNGDDI CWALATLGFD NYVLPMRRYL SKYREMEGEK  120
LSSDNLGNSS HFRDRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4024115192Transcription factor HapC (Eurofung)
4g92_B2e-4024115192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938445.17e-61nuclear transcription factor Y subunit B-1
SwissprotO822481e-52NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A061EW303e-59A0A061EW30_THECC; Nuclear transcription factor Y subunit B-5
STRINGEOY064795e-60(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]