PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0349s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 404aa    MW: 45177.3 Da    PI: 4.6839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0349s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-193584255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Kalax.0349s0025.1.p 35 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 84
                         79*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-313491No hitNo description
Gene3DG3DSA:3.30.730.105.1E-283591IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-193593IPR016177DNA-binding domain
SMARTSM003802.1E-353598IPR001471AP2/ERF domain
PfamPF008473.3E-143584IPR001471AP2/ERF domain
PROSITE profilePS5103219.9813592IPR001471AP2/ERF domain
PRINTSPR003671.8E-83647IPR001471AP2/ERF domain
PRINTSPR003671.8E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSRKRRANEQ AMEHQAGKMC PDVFVKESPR RAPKRYVGVR QRPSGRWVAE IKDTIQKIRV  60
WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSEPCLTT PALPSKITKL LLHRLKARDC  120
NMEPKGKTQQ VTAERNDPDF DKVAGYRDFE EKDGGGFSTA HFTDEFLNDA EDYPACDDNL  180
FINDAEDYHA LPSGSLHACG TESQQTEVME HHSMCNSTSW SAVETSYMES DSKPGGEGEA  240
ETNREGIERP QVGALDFHFV DDVGKASAAE CYYSAFQIAE EIGEPLMEQG GGVGDEPAML  300
LNSVMRLMKY ERKFSASLYA FNGVTECLKL KVGAEIRCGD HLSNLRDACG RKKREDEDNE  360
ARKRDDKEAT GKEAEQAMEL SEVDSDLILW SCLDLQPICF VNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14351001479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603585.11e-101ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A2C9WDA31e-100A0A2C9WDA3_MANES; Uncharacterized protein
STRINGcassava4.1_008867m1e-100(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-23related to AP2 11