PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0349s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 421aa    MW: 46430.3 Da    PI: 8.4608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0349s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.3e-06256277223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C  Cgk F+r  nL+ H+r H
  Kalax.0349s0029.1.p 256 FCRVCGKGFKRDANLRMHMRAH 277
                          6*******************99 PP
2zf-C2H211.50.00093356379123
                          EEETTTT.EEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                          y C+ Cg k Fs  s+L++H + +
  Kalax.0349s0029.1.p 356 YACKRCGqKQFSVLSDLRTHEKHC 379
                          89******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.74E-6253280No hitNo description
PROSITE profilePS5015712.404255282IPR007087Zinc finger, C2H2
SMARTSM003550.0037255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-6257281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355270318351IPR015880Zinc finger, C2H2-like
SMARTSM0035524356378IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAPTSSSCFL PNEPASSSQP MLGYGVMTSN GGHEDVESSN PVGLNHFSTS LLCSISILKE  60
RVRQAQSLVV SLFASPSITD QHYSQQVVEP ASMTMARISS LVQDIVAVST SMMLTCQQMS  120
LSNPTRQHFQ ASSDHHHPSP ISGHRHNQTL IRDGDGNNHV IIQAGQDVGH QAAHKQKQIL  180
GHHDMFGIGS SEQDMEWFGG SSCSFANATL SYDTATTSTT NSIQQESNNT EHHQLSHPDL  240
IIEMDAADLL AKYTHFCRVC GKGFKRDANL RMHMRAHGDE YKSIAALANP AKINNDDPNI  300
PATTPCTADK TARRSIRYSC PHHGCRWNRK HPKFQPLKSM ICAKNHYKRS HCPKMYACKR  360
CGQKQFSVLS DLRTHEKHCG ESKWRCSCGT TFSRKDKLLG HVGLFAGHVP VIVNHVLSHT  420
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356942.11e-113PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A498INF81e-111A0A498INF8_MALDO; Uncharacterized protein
STRINGXP_009356942.11e-113(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-94C2H2 family protein