PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0352s0031.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 130aa MW: 14314.7 Da PI: 7.6213

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0352s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.5e-05	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Kalax.0352s0031.1.p 44 FSCNYCQRKFYSSQALGGHQNAH 66 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.87E-6	42	71	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-4	44	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.094	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MSYFYSPDNS INTSLHLSPP NLRGLERSSS SGSTDHNSNP LRVFSCNYCQ RKFYSSQALG 60 GHQNAHKLER TLDKKSRELF SSSGASQAND YGGDDLVRRF HDGAGMIVYG GGNSVYQDEF 120 NPLDLSLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474223.1	6e-25	PREDICTED: zinc finger protein 2
Refseq	XP_012474225.1	6e-25	PREDICTED: zinc finger protein 2
TrEMBL	A0A0D2MW77	1e-23	A0A0D2MW77_GOSRA; Uncharacterized protein
TrEMBL	A0A4D8ZWK8	5e-24	A0A4D8ZWK8_SALSN; Uncharacterized protein
STRING	Gorai.004G100800.1	2e-24	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	5e-23	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0352s0031.1.p