PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0354s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 125aa MW: 14019.2 Da PI: 10.9176

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0354s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	12	73	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+++t+eq+ Lee+++ r+psa ++ +++++l +++ ++V++WFqN++a++k+ Kalax.0354s0001.1.p 12 RSSRWCPTAEQVMLLEEMYKGgLRNPSAGQIHQITAHLsnfgKVQGKNVFYWFQNHKARDKQ 73 689***************99************************************97 PP
2	Wus_type_Homeobox	111.3	5.3e-36	13	74	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+eQ+++Lee+yk Glr+P++ +i++ita+L+++Gk+++kNVfyWFQN+kaR++q+ Kalax.0354s0001.1.p 13 SSRWCPTAEQVMLLEEMYKGGLRNPSAGQIHQITAHLSNFGKVQGKNVFYWFQNHKARDKQR 74 79***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.05E-12	8	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.944	9	74	IPR001356	Homeobox domain
SMART	SM00389	3.6E-4	11	78	IPR001356	Homeobox domain
CDD	cd00086	0.00143	12	72	No hit	No description
Pfam	PF00046	6.5E-17	12	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-7	14	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MCPAGTSASL SRSSRWCPTA EQVMLLEEMY KGGLRNPSAG QIHQITAHLS NFGKVQGKNV 60 FYWFQNHKAR DKQRLKKKLP LKPQHQQIFF HATSSFSPQR PVSCISFAGP LIFTPQVRTS 120 PFCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019239462.1	3e-34	PREDICTED: WUSCHEL-related homeobox 3-like
Swissprot	A2XZR3	1e-32	WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBL	A0A2G2YGK9	6e-33	A0A2G2YGK9_CAPAN; Uncharacterized protein
STRING	cassava4.1_030827m	2e-33	(Manihot esculenta)
STRING	XP_009778688.1	2e-33	(Nicotiana sylvestris)
STRING	OPUNC05G01220.1	2e-33	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	9e-30	WOX family protein

Link Out ? help Back to Top
Phytozome	Kalax.0354s0001.1.p