PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0355s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 340aa    MW: 38665.9 Da    PI: 5.7009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0355s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.8e-5181371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrFhPtdee+v +yL +kv ++++++  +i ++d +k+ePwdLpk ++ +e+e y++s+rd+ky++g r+nratk+gyWkatgkdk
  Kalax.0355s0004.1.p   8 LPRGFRFHPTDEEIVIHYLIPKVMNSNFST-AAIGQADFNKCEPWDLPKIANMGETERYYYSQRDRKYPSGLRTNRATKAGYWKATGKDK 96 
                          799************************999.78***************88888999********************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++    ++elvg+kktLvfy+grap+gekt+Wvmheyrl
  Kalax.0355s0004.1.p  97 EIYEGtgnRRELVGMKKTLVFYTGRAPRGEKTNWVMHEYRL 137
                          ***987767778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-595161IPR003441NAC domain
PROSITE profilePS5100553.2658160IPR003441NAC domain
PfamPF023652.6E-269137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEDLMGLPR GFRFHPTDEE IVIHYLIPKV MNSNFSTAAI GQADFNKCEP WDLPKIANMG  60
ETERYYYSQR DRKYPSGLRT NRATKAGYWK ATGKDKEIYE GTGNRRELVG MKKTLVFYTG  120
RAPRGEKTNW VMHEYRLQPH FSSSMIPKND GWVVSRVFHK NNNSGGSGSG MHEKTYSDDN  180
SDSFSLVPNA DSFSTDQLIM EDFKSIPPLV DLSALPPHPP HSNASQLIQD LKPMISHDCS  240
FHQPHTDANM WPPTDAYDDD QLIYSDIPSY YYHSFSTTLL QSPDPFGYEQ PEDERNNVVG  300
ALEGNERKPG SPQCATSAEI SSHDQVYDNE VMSFFHRRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-47616418172NAC domain-containing protein 19
3swm_B5e-47616418172NAC domain-containing protein 19
3swm_C5e-47616418172NAC domain-containing protein 19
3swm_D5e-47616418172NAC domain-containing protein 19
3swp_A5e-47616418172NAC domain-containing protein 19
3swp_B5e-47616418172NAC domain-containing protein 19
3swp_C5e-47616418172NAC domain-containing protein 19
3swp_D5e-47616418172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489720.14e-81NAC domain-containing protein 87
SwissprotQ9SQQ64e-81NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A1S2XI629e-80A0A1S2XI62_CICAR; NAC domain-containing protein 87
STRINGXP_004489720.11e-80(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-82NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]