PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0356s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 502aa    MW: 54138.3 Da    PI: 8.6056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0356s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kalax.0356s0007.1.p 77 FVCEICSKGFQRDQNLQLHRRGH 99
                         89*******************88 PP
2zf-C2H212.10.00061153175123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H r +
  Kalax.0356s0007.1.p 153 WKCDKCSKKYAVQSDWKAHSRIC 175
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.3E-77699No hitNo description
SMARTSM003550.0367799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8877799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355270118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.3E-7148173No hitNo description
SMARTSM00355130153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSKLSSLSNE GSVSSSNIRH ESANQNIIYG SLDHQQSFAQ SIQQPAAKKK RNLPGNPDPD  60
AEVIALSPKT LMATNRFVCE ICSKGFQRDQ NLQLHRRGHN LPWKLKQRSS KEIKKKVYVC  120
PELSCVHHDP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSRICGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR GCATTTTNPP IISSHHLPAS DNSLSHINPN  240
YSFAPDHLPM HHQPSSFIPT MKKEHQHGSF PPWLPPYPPP QAHFDLSPSS AIFSTAQGFT  300
GQDLTAGNPS SSPNPNTNSM GPTLPPYPSP PPIMPTSSHM SATALLQKAA QMGSTMSKTG  360
LSQPAAAMIS GRGGGAHHQT HVSADNSFGL NSSSSHDAAV TSATGFLTSF GFDDAFGVML  420
NNHNNNENDP LNTKSRSVTD DDRGTRGGGN EHALTRDFLG LKALSHSDIL SIAGDLGDCV  480
NNNSSAAAAG SHYITTASSE P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34149210364Zinc finger protein JACKDAW
5b3h_F1e-34149210364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335364.11e-157protein indeterminate-domain 11-like isoform X2
TrEMBLA0A1Q3DDM01e-157A0A1Q3DDM0_CEPFO; Zf-C2H2_jaz domain-containing protein
STRINGVIT_09s0002g02300.t011e-155(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2