PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0356s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21491.8 Da    PI: 10.6329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0356s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien +nrq+tfskRr gilKKA+ELSvLC+aev ++++ss+g+ y ++s
  Kalax.0356s0026.1.p  9 KRIENATNRQITFSKRRYGILKKAFELSVLCEAEVVLLVLSSSGHSYNFAS 59
                         79**********************************************986 PP
2K-box59.21.8e-20851831398
                K-box  13 kaeslqqelakLkkeienLq.............reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                          ++e ++ e++ +k++i++L+              e Rh+ Ged++ L l eL+qLe++++++++++RskK ++l e+i+ l++k ++lqe
  Kalax.0356s0026.1.p  85 TTEFWRCEIEVMKRRIDSLEasqnlfvlganayCESRHFAGEDITVLGLGELKQLERKVKTGVERVRSKKRRILSEHISSLKQKHRALQE 174
                          567788888888888888877767777777777677****************************************************** PP

                K-box  90 enkaLrkkl 98 
                          en++L+ k+
  Kalax.0356s0026.1.p 175 ENTRLQIKV 183
                          *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.221161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-35160IPR002100Transcription factor, MADS-box
CDDcd002655.80E-32272No hitNo description
SuperFamilySSF554552.62E-28282IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-1785183IPR002487Transcription factor, K-box
PROSITE profilePS5129711.73586187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRGKVELKR IENATNRQIT FSKRRYGILK KAFELSVLCE AEVVLLVLSS SGHSYNFASH  60
NVDRTIARYR NDVGLPQPAN QLLNTTEFWR CEIEVMKRRI DSLEASQNLF VLGANAYCES  120
RHFAGEDITV LGLGELKQLE RKVKTGVERV RSKKRRILSE HISSLKQKHR ALQEENTRLQ  180
IKVRAVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19199191MEF2 CHIMERA
6byy_B2e-19199191MEF2 CHIMERA
6byy_C2e-19199191MEF2 CHIMERA
6byy_D2e-19199191MEF2 CHIMERA
6bz1_A2e-19199191MEF2 CHIMERA
6bz1_B2e-19199191MEF2 CHIMERA
6bz1_C2e-19199191MEF2 CHIMERA
6bz1_D2e-19199191MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257105.14e-75PREDICTED: MADS-box transcription factor 6-like isoform X1
TrEMBLA0A2R6PSH87e-77A0A2R6PSH8_ACTCH; MADS-box transcription factor (Fragment)
STRINGVIT_17s0000g01230.t014e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-28AGAMOUS-like 6