PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0358s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24338.1 Da    PI: 5.8326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0358s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-201468256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          kR++f+++q++ Le lF ++++p  +++++LA+ lgL  rqV +WFqNrRa+ +
  Kalax.0358s0012.1.p 14 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLR 68
                         58***************************************************87 PP
2HD-ZIP_I/II110.11.6e-3514106193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ek+rr+s++q+k+LE  F +e+k ep+ K++la++Lgl+prqva+WFqnrRAR ++kq+E++y  Lk+++d+l+++ e L+ke+++L ++
  Kalax.0358s0012.1.p  14 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLRSKQIEREYGILKASHDTLASKFECLKKEKQTLDAQ 103
                          699*************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kalax.0358s0012.1.p 104 VQA 106
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-17671IPR009057Homeodomain-like
PROSITE profilePS5007117.8151070IPR001356Homeobox domain
SMARTSM003897.7E-161274IPR001356Homeobox domain
PfamPF000461.9E-171468IPR001356Homeobox domain
CDDcd000862.67E-141571No hitNo description
Gene3DG3DSA:1.10.10.606.6E-191576IPR009057Homeodomain-like
PRINTSPR000311.1E-54150IPR000047Helix-turn-helix motif
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PRINTSPR000311.1E-55066IPR000047Helix-turn-helix motif
PfamPF021834.2E-1670111IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNLEMCGSRG GKNEKRRRFS EKQIKSLEIL FGSESKPEPR TKQQLASDLG LHPRQVAIWF  60
QNRRARLRSK QIEREYGILK ASHDTLASKF ECLKKEKQTL DAQVQALRDQ LRTDEGNTAG  120
SALPSKQSWR NEEPEIEDYF HESKGKPTYI LGSYNYETDN KSNPDCLKEE DYILNLAEPV  180
DSSLTSSENS WDSSCFLDQT CSSSLLWEFW S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318EKRRRF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9FZI83e-48A0A2N9FZI8_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-47homeobox 7