PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0360s0054.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 129aa MW: 14952.2 Da PI: 10.4764

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0360s0054.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.2	5.7e-13	6	33	29	56
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 e+e LA++l+L++rqV vWFqNrRa+ k Kalax.0360s0054.1.p 6 EKETLADQLKLKTRQVEVWFQNRRARSK 33 789***********************99 PP
2	HD-ZIP_I/II	73.7	3.4e-24	6	67	28	89
HD-ZIP_I/II 28 rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +K++la +L+l++rqv+vWFqnrRAR k+kq+E++ + L++++++l+++n+rL+++ +eLr+ Kalax.0360s0054.1.p 6 EKETLADQLKLKTRQVEVWFQNRRARSKSKQMEVELHLLRQRCENLSDQNQRLKDQIRELRA 67 799*********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.455	1	35	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.2E-11	5	38	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.55E-10	5	44	IPR009057	Homeodomain-like
CDD	cd00086	4.24E-8	5	36	No hit	No description
Pfam	PF00046	2.5E-10	6	33	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	10	33	IPR017970	Homeobox, conserved site
SMART	SM00340	4.0E-6	35	78	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MTFLSEKETL ADQLKLKTRQ VEVWFQNRRA RSKSKQMEVE LHLLRQRCEN LSDQNQRLKD 60 QIRELRATNL IGPRPSPFEA KLVKLAPSPI CPSCNKSFTV EDSPRSSDPE LSGFKSHRIF 120 YTIRLHSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	35	RRARSKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410384.1	1e-25	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
Refseq	XP_017410385.1	1e-25	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2
Refseq	XP_017410386.1	1e-25	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X3
Refseq	XP_019433020.1	1e-25	PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBL	A0A0L9TG71	3e-24	A0A0L9TG71_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R8K6	3e-24	A0A0S3R8K6_PHAAN; Uncharacterized protein
TrEMBL	A0A1J7FP84	3e-24	A0A1J7FP84_LUPAN; Uncharacterized protein
STRING	GLYMA13G00310.1	6e-24	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	4e-21	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0360s0054.1.p