PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0362s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 252aa    MW: 27121.2 Da    PI: 4.4501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0362s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-05226248223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+k+F++   L++H +  H
  Kalax.0362s0045.1.p 226 TCGSCSKTFNSDKALESHSKAkH 248
                          7*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.263225251IPR007087Zinc finger, C2H2
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
YVKIGEQKLV IGTLSADKHP QIQYDVVFEK DFELSHNWKN GSIFFCGYRT QNPGDDEGFS  60
GDEFDSDSED EELPIENGKP ELVNVAAAAK PAAADKAKVS VQEAAKEAKA DSDEDSSDDE  120
DFSDSDDEDI SDDGDEKMGE GDSDDEEDSS EEDEKTPTPK KENKKRPTEP ENKTPVPSKK  180
VKIATPQKTD GKKAHTATPH PAKQAGKTPK SENPKTPATG GKSSVTCGSC SKTFNSDKAL  240
ESHSKAKHAA K*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270966.22e-59PREDICTED: histone deacetylase HDT1
TrEMBLA0A0V0HRY43e-57A0A0V0HRY4_SOLCH; Putative histone deacetylase HDT1-like
STRINGPGSC0003DMT4000216446e-58(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-16histone deacetylase 3