PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0363s0038.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 298aa MW: 33026.3 Da PI: 7.5475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0363s0038.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.2	5e-47	10	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lppGfrF Ptde lv++yL kk+ ++ + + e+d++ vePw+Lp+ k + +ewyfFs rd+kyatg r+n Kalax.0363s0038.1.p 10 LPPGFRFCPTDEKLVCHYLSKKAIESAatacK---DeaaeglknmgmSMVEIDLHAVEPWQLPEVGKLNGTEWYFFSFRDRKYATGFRTN 96 79******************8777744440...24566777777459**********76677899*************** PP NAM 76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 rat+sgyWkatgkd+++l+ ++ +vg++ktLvfyk+rap+g kt W+mhe+rle Kalax.0363s0038.1.p 97 RATTSGYWKATGKDRTILDPsDRCVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 151 ***************867778*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-56	8	169	IPR003441	NAC domain
PROSITE profile	PS51005	53.499	10	169	IPR003441	NAC domain
Pfam	PF02365	5.3E-26	11	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGLKEVGARL PPGFRFCPTD EKLVCHYLSK KAIESAATAC KDEAAEGLKN MGMSMVEIDL 60 HAVEPWQLPE VGKLNGTEWY FFSFRDRKYA TGFRTNRATT SGYWKATGKD RTILDPSDRC 120 VVGMRKTLVF YKNRAPNGIK TGWIMHEFRL ETPHLPPKED WVLCRVFHKA KISASSNHGC 180 CQPHAAMLPC VISQNQISSL SSTQNGNMVS NHKALLNNHN NHYGAVFKFG AQEEKNPATA 240 ASSVTEMNSV DDGRGEGRGS YDFLWGINLE EINSLAPSDE GGTLQDHQMD ANSLSFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-43	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-43	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-43	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-43	1	169	4	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-43	1	169	7	168	NAC domain-containing protein 19
3swm_B	6e-43	1	169	7	168	NAC domain-containing protein 19
3swm_C	6e-43	1	169	7	168	NAC domain-containing protein 19
3swm_D	6e-43	1	169	7	168	NAC domain-containing protein 19
3swp_A	6e-43	1	169	7	168	NAC domain-containing protein 19
3swp_B	6e-43	1	169	7	168	NAC domain-containing protein 19
3swp_C	6e-43	1	169	7	168	NAC domain-containing protein 19
3swp_D	6e-43	1	169	7	168	NAC domain-containing protein 19
4dul_A	4e-43	1	169	4	165	NAC domain-containing protein 19
4dul_B	4e-43	1	169	4	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468474.1	4e-99	protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A072VLL3	9e-98	A0A072VLL3_MEDTR; NAC transcription factor-like protein
STRING	EOX94424	2e-98	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-86	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Kalax.0363s0038.1.p