PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0365s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32486 Da    PI: 9.5341
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0365s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-25953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         k+ien++nrqvtfskRrng+ KKA+ELSvLCd++ a+i+fs++g+
  Kalax.0365s0001.1.p  9 KKIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDLALIMFSPSGR 53
                         68****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.315161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.70E-35275No hitNo description
PRINTSPR004046.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRVKLEIKK IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDLALIMFSP SGRPSLFSGK  60
KSFEQILNRY TSLPEHERGR YINYSELQRH MTICKSQLEE THRKLKIFEG NPSDITTLAE  120
VNYNEKILED TLKRVRMRKV QVAQDFMLVN DGHGVSWTPN MYSLDSLGMQ VQRRTPQLQI  180
LNFVGSGCLP PASRSELRRS IEMSPQHQTS NLISLHNLQL QGSHEHSLSP SSGTEIENNN  240
INQAASHYNG CGAQPFDVNI SPWTQFYTPA TAAERSPVLR PANPML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-16177177Myocyte-specific enhancer factor 2B
1tqe_Q3e-16177177Myocyte-specific enhancer factor 2B
1tqe_R3e-16177177Myocyte-specific enhancer factor 2B
1tqe_S3e-16177177Myocyte-specific enhancer factor 2B
6byy_A3e-16177177MEF2 CHIMERA
6byy_B3e-16177177MEF2 CHIMERA
6byy_C3e-16177177MEF2 CHIMERA
6byy_D3e-16177177MEF2 CHIMERA
6bz1_A3e-16177177MEF2 CHIMERA
6bz1_B3e-16177177MEF2 CHIMERA
6bz1_C3e-16177177MEF2 CHIMERA
6bz1_D3e-16177177MEF2 CHIMERA
6c9l_A3e-16177177Myocyte-specific enhancer factor 2B
6c9l_B3e-16177177Myocyte-specific enhancer factor 2B
6c9l_C3e-16177177Myocyte-specific enhancer factor 2B
6c9l_D3e-16177177Myocyte-specific enhancer factor 2B
6c9l_E3e-16177177Myocyte-specific enhancer factor 2B
6c9l_F3e-16177177Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922933.17e-74agamous-like MADS-box protein AGL104 isoform X2
RefseqXP_024930990.17e-74agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA5BY194e-77A5BY19_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09540.t019e-72(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-39AGAMOUS-like 104