PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0366s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 332aa    MW: 36775 Da    PI: 9.4971
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0366s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.3e-121255245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         ++en s+r vt+skRr+g++KK e   + ++ +v  ++fs  gk
  Kalax.0366s0022.1.p 12 KVENISRRRVTLSKRRQGLFKKMEKFGIVTGFDVTAVVFSVAGK 55
                         689*************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-13360IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.493359IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-13362IPR002100Transcription factor, MADS-box
CDDcd001204.00E-14460No hitNo description
PRINTSPR004046.6E-10525IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131257IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGTGRKKINI EKVENISRRR VTLSKRRQGL FKKMEKFGIV TGFDVTAVVF SVAGKPMMFG  60
DIIVFQLFMT EVLGSSGDFE FDEETVGNMR LGFEKLGEEV KECLDCETLV MIRNKLIELK  120
DKLKGVLSDE ETEARAKQSS LSLLQALSVT EKKKLEFLEK SLKEITTLCD VDALFICATK  180
SNKSSESSFY AYPDDKHTVR KLIIKCCDYF RKPIIVDKVL PHSIVCGKPM SNIAAKNPAA  240
EKRPTPQSTV AAEKLMSPSI STAEKVLTAT VSKSELVKKA NSIIKLSNVK LAMLKEAKVA  300
NEEHGMHRAG STEAEVLEGS SGKLFPYIKF L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-13AGAMOUS-like 29