PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0369s0001.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30585.6 Da    PI: 7.2923
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0369s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.6e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nr+vtfskRr+g+ KKA+E+SvLCdaeva+iifs +gkl+eys+
  Kalax.0369s0001.2.p  9 KRIENKINRKVTFSKRRTGLVKKAHEISVLCDAEVALIIFSGDGKLFEYST 59
                         79***********************************************96 PP
2K-box912.1e-30831822100
                K-box   2 qkssgksleeakaeslqqel.akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          q+   ++l+++ +e+ + e+ +kLk+++e Lqr++Rh+lGed+++Ls+ eLq+Le+qL+ slk iR++Kn+l++e+i+elqkke+++qe+
  Kalax.0369s0001.2.p  83 QQMGASDLQQNPQENKSMEYnDKLKSRLELLQRNHRHYLGEDVDTLSMGELQNLEHQLHASLKLIRERKNHLMHESISELQKKERAMQEQ 172
                          5555566777777778888747******************************************************************** PP

                K-box  91 nkaLrkklee 100
                          n++L++k++e
  Kalax.0369s0001.2.p 173 NNMLTRKIKE 182
                          *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.32E-40279No hitNo description
SuperFamilySSF554552.22E-33284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2492180IPR002487Transcription factor, K-box
PROSITE profilePS5129715.03196186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRKVT FSKRRTGLVK KAHEISVLCD AEVALIIFSG DGKLFEYSTD  60
SCMEKILERY ERYSYAERSQ HYQQMGASDL QQNPQENKSM EYNDKLKSRL ELLQRNHRHY  120
LGEDVDTLSM GELQNLEHQL HASLKLIRER KNHLMHESIS ELQKKERAMQ EQNNMLTRKI  180
KEKEMEKTLM VRQEEVHHWE YQHQHNHGNS SSSFHLGQPV PCLNTGHTTY QVEADGMMSQ  240
NELELTLEPV YSYHLGLFAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-21174173MEF2 CHIMERA
6byy_B5e-21174173MEF2 CHIMERA
6byy_C5e-21174173MEF2 CHIMERA
6byy_D5e-21174173MEF2 CHIMERA
6bz1_A6e-21174173MEF2 CHIMERA
6bz1_B6e-21174173MEF2 CHIMERA
6bz1_C6e-21174173MEF2 CHIMERA
6bz1_D6e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623236.11e-112truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-111AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A182BPB81e-108A0A182BPB8_9ROSI; APETALA1
STRINGcassava4.1_029935m1e-112(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.18e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]