PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0370s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 353aa    MW: 40323.6 Da    PI: 6.4218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0370s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.83.2e-47111361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrF+P+d+el+++yL++k+++++l + + i+e+diyk++Pw+L++k+  +e+e+yfFs+rd+ky++g+r+nra+ sgyWkatg+dk
  Kalax.0370s0001.1.p  11 LPAGFRFRPSDQELIDHYLQPKITSRPLAA-SLIAEIDIYKHHPWELRQKALFGEDELYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDK 99 
                          799************************999.88**************987778999********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l++ +++++g+kk Lvfy gr pk  ktdW+m+eyrl
  Kalax.0370s0001.1.p 100 AILTAsGSKTIGVKKALVFYAGRPPK--KTDWMMDEYRL 136
                          **99878889***************9..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-569163IPR003441NAC domain
PROSITE profilePS5100554.21911163IPR003441NAC domain
PfamPF023655.1E-2512136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MERGHETNFQ LPAGFRFRPS DQELIDHYLQ PKITSRPLAA SLIAEIDIYK HHPWELRQKA  60
LFGEDELYFF SPRDRKYPNG SRPNRAAGSG YWKATGTDKA ILTASGSKTI GVKKALVFYA  120
GRPPKKTDWM MDEYRLPETM IRPSRSERTM RLDDWVLCRV RQKTNTTKNL HRVPDPPKPE  180
SMRYLMQVED SLPAVTNNDN EMFKDVMYKH CPVLTSLLTG QPLHGMETNQ CASPQEIYKH  240
NSCNSVYEDG SCSDTSPMTV FSFGSFLNPL NEKEIQENPC GIPLPSKNLS NENNYNLFGT  300
QKMVVQDDMD FCCDLYYEAD MFTPSPSSVD MTTDSVFIDG YIQHFSSPPY KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-60716913171NO APICAL MERISTEM PROTEIN
1ut4_B6e-60716913171NO APICAL MERISTEM PROTEIN
1ut7_A6e-60716913171NO APICAL MERISTEM PROTEIN
1ut7_B6e-60716913171NO APICAL MERISTEM PROTEIN
3swm_A7e-60716916174NAC domain-containing protein 19
3swm_B7e-60716916174NAC domain-containing protein 19
3swm_C7e-60716916174NAC domain-containing protein 19
3swm_D7e-60716916174NAC domain-containing protein 19
3swp_A7e-60716916174NAC domain-containing protein 19
3swp_B7e-60716916174NAC domain-containing protein 19
3swp_C7e-60716916174NAC domain-containing protein 19
3swp_D7e-60716916174NAC domain-containing protein 19
4dul_A6e-60716913171NAC domain-containing protein 19
4dul_B6e-60716913171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.21e-107PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A438DTI41e-106A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ41e-106F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-65NAC-like, activated by AP3/PI