PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0370s0002.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 530aa    MW: 57977.5 Da    PI: 8.9033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0370s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154767323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kalax.0370s0002.2.p 47 CEICNKGFQRDQNLQLHRRGH 67
                         *******************88 PP
2zf-C2H211.60.00085122144123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  ks+ k H + +
  Kalax.0370s0002.2.p 122 WKCEKCPKKYAVKSDWKAHSKIC 144
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.03E-74467No hitNo description
Gene3DG3DSA:3.30.160.602.5E-54467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8244567IPR007087Zinc finger, C2H2
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM0035511087117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4110143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.03E-7117142No hitNo description
SMARTSM0035561122149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MMSQATQPSA SSSALKRKRN LPGTPDPDSE VVALSPTSLM ATNRFLCEIC NKGFQRDQNL  60
QLHRRGHNLP WKLKQRSNKE VVKKKVYICP EKSCVHHDPS RALGDLTGIK KHFSRKHGEK  120
KWKCEKCPKK YAVKSDWKAH SKICGTKEHK CDCGTLFSRK DSFITHRAFC TAVVDQSGSR  180
FASSVAAGTN NPLSLRNDFL SGNLGIPQGV DTNQFSVGGF YPELSTSSFH SYGHVSNNTD  240
GSKSISRHII PQWLDQHPAL NASAHLLMGN LAGNLSHELL LQNAGQVNLF GSSSSSQAPW  300
LNKCTDQSAF GSGNLSSLDQ ILGNTSGGSS GMMQVKREDE ILSNADFVEN MTTSLYNPNN  360
LSHQQQQQQA ITSNQSAAEQ FLSSFYGRNN SNSLGLISSG ASNGQVSFAG NNNNGFVDNN  420
SFCIISRPPP PVIKDSDNTN ASLNHHHHHQ MLLHEAVAAG RAKPPETNPN AIKQQQAESS  480
QTRDFLGVGR NEIMREEQFQ LAMVSDQQFG SAAAGAESDM SHYNQQWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29118183367Zinc finger protein JACKDAW
5b3h_F2e-29118183367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-96C2H2-like zinc finger protein