PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0373s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 256aa MW: 29323.8 Da PI: 4.6412

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0373s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.6	1.2e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd+elv++yLk+k++g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgk Kalax.0373s0029.1.p 6 LPPGFRFHPTDQELVDYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGK 94 79**************************.99**********85335566888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s +++ +g+kktLv+y+grap+g +t Wvmheyrl Kalax.0373s0029.1.p 95 DRRVIS-QSRPIGMKKTLVYYRGRAPQGIRTGWVMHEYRL 133 **.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	6	156	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDQELV DYYLKRKIHG LEIELDIIPE VDLYKCEPWE LADKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVIS QSRPIGMKKT LVYYRGRAPQ 120 GIRTGWVMHE YRLDENECED SSGIQDTYAL CRVFKKSGEF DHQEQQGQCS LPTAAVMEGS 180 NLLTAMINSE QEMVMSPDMD MGMGVGSSSS YSRVDEVEEL EKDDSWMQFI TDDDPWFSSS 240 SATMGGEEIT TFNHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	1	156	15	168	NAC domain-containing protein 19
3swm_B	1e-53	1	156	15	168	NAC domain-containing protein 19
3swm_C	1e-53	1	156	15	168	NAC domain-containing protein 19
3swm_D	1e-53	1	156	15	168	NAC domain-containing protein 19
3swp_A	1e-53	1	156	15	168	NAC domain-containing protein 19
3swp_B	1e-53	1	156	15	168	NAC domain-containing protein 19
3swp_C	1e-53	1	156	15	168	NAC domain-containing protein 19
3swp_D	1e-53	1	156	15	168	NAC domain-containing protein 19
4dul_A	1e-53	1	156	12	165	NAC domain-containing protein 19
4dul_B	1e-53	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019457468.1	1e-128	PREDICTED: NAC domain-containing protein 86-like
Swissprot	A4VCM0	7e-89	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1J7GSQ9	1e-127	A0A1J7GSQ9_LUPAN; Uncharacterized protein
STRING	XP_004515256.1	1e-126	(Cicer arietinum)
STRING	GLYMA16G34310.2	1e-126	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-114	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Kalax.0373s0029.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]