PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0374s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25432.1 Da    PI: 8.9563
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0374s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.7e-1974127356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++++++eq+ +Le  F +++++  +++e+LA +lgL+ rqV vWFqNrRa++k
  Kalax.0374s0004.1.p  74 NKRKLSEEQVSVLEVNFGNEHKLECDRKERLAGELGLDPRQVAVWFQNRRARWK 127
                          56799************************************************9 PP
2HD-ZIP_I/II114.66.1e-3774164292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+ls+eqv++LE +F +e+kLe +rK++la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d+l  +n++L+++v +L+e l
  Kalax.0374s0004.1.p  74 NKRKLSEEQVSVLEVNFGNEHKLECDRKERLAGELGLDPRQVAVWFQNRRARWKAKKLEEEYSRLKAAHDTLLLHNSHLQSQVMKLEELL 163
                          79************************************************************************************9877 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Kalax.0374s0004.1.p 164 E 164
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.29369129IPR001356Homeobox domain
SMARTSM003894.2E-1771133IPR001356Homeobox domain
SuperFamilySSF466892.87E-1773137IPR009057Homeodomain-like
CDDcd000865.71E-1673130No hitNo description
PfamPF000468.2E-1774127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-2075136IPR009057Homeodomain-like
PRINTSPR000311.5E-5100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5109125IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MISAVKNNRS EVGDDHRLLI SQMYDSAGVV YAQIMETTGK QEAAGVGGKK MRRKKRKQKR  60
KEAAACSSEA GLKNKRKLSE EQVSVLEVNF GNEHKLECDR KERLAGELGL DPRQVAVWFQ  120
NRRARWKAKK LEEEYSRLKA AHDTLLLHNS HLQSQVMKLE ELLEKQARMR LCSEGNSPTS  180
SGSMGAAPFL GLGGFGIIEE CLPNEFYTAH QNCAMEMEWP TLYDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RRKKRKQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023003086.13e-58homeobox-leucine zipper protein ATHB-40-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.15e-42homeobox 53