PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0375s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 449aa    MW: 50812.9 Da    PI: 5.1433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0375s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34121032102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d++ ++++sws++++sfvv+d+ efak++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ 
  Kalax.0375s0024.1.p  12 FLAKTYEMVDDPTSNTIVSWSSSNTSFVVWDPPEFAKTLLPTFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFLRGQP 92 
                          9***************************************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          + +++i+r+k 
  Kalax.0375s0024.1.p  93 HRMKNIHRRKP 103
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-348101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-379101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDLGGSNALP PFLAKTYEMV DDPTSNTIVS WSSSNTSFVV WDPPEFAKTL LPTFFKHNNF  60
SSFIRQLNTY GFRKVDPEQW EFANDDFLRG QPHRMKNIHR RKPVHSHSVP NQGHGISSPL  120
TESERHGYKG DIERLKREKE VLQLELEEKK GGREEFELHA QSLKQQLECI IQRQEKLMSF  180
LAQVLNKPGL VLSLTPTITS HERKRRLLTT DCLQGEAEID RNRLRNSQVI GMEEAVSATM  240
SSLITEPIDL MESSIAHWEE IIHQMAQTCA EDVYNIQTPS LAVILTEIDP PLEQAVTNSE  300
NRFYPMANSK ENSLTFELDE SQGCADSLAL SFLQPNTDVP LTSTGTDMNH VLSVQAAEVV  360
QPTEKASESV NEARTTTIVP TGANDTFWEH FFTEHPGSSN VQDAQFEKKG SETKKQSDHS  420
KLWWNIPSVN NLVEQMSHLT PAERWNPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-23310111120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655551.11e-143PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655552.11e-143PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655553.11e-143PREDICTED: heat stress transcription factor A-4a
TrEMBLA0A0U3TX721e-143A0A0U3TX72_VITPS; Transcription factor HsfA4a
STRINGXP_006449558.11e-142(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-90heat shock transcription factor A4A