PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0375s0055.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 626aa MW: 69128.4 Da PI: 4.084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0375s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.2e-06	389	409	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++a+ G+C G +C++ H+ Kalax.0375s0055.1.p 389 ICDYYAE-GWCIKGTSCRCLHV 409 6****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.46E-5	384	408	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.023	384	411	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MGAVGGELRS GERVEEEEDP EEEEFEEEEE VVADAQVDEE GDEVEEEAEV EELKVREEEE 60 EEVDGLEDDV SEEEEEEEEE VDGLEEDVSE GEEVEDGVDM ELQGGEEEED VDELEVEGVG 120 GAFNVDLQRA HIEEDNEEDD DPSASPIAYE EDTAESVALR TENVDCASVG EGPKKMESDY 180 GEKERSHPIN KKDVGDIDFC ALRSESKAIE TAKPICSTRS TFVVEAGDVK NEIVDRASDE 240 EGVKEMKSDN EEKEKSPPFY KRNTVDIDVY PLSSETKGTE TLTPLSTIGT EMAIKYSSEH 300 PPGMSFTPGT DTLSNMTFVA ESLNSSTVQR GEATLNHELK VEAGGKYMNL DLKEHAMPKA 360 SRVVATSRNK RSSSFSTQLM DTNKRPAIIC DYYAEGWCIK GTSCRCLHVK EDKNYTNKQL 420 ERGLASANGE KHVGEGAGYG TKSIYQEPHA ESHTRQLNVE LFLYFVKLEF SRGLVASSSA 480 FVGRFGPSSN VTEAIDYRGN QHLFNDPLQS IADRYIKQHL PPPSTAGKFS SRQISTVDGS 540 SNSAISLSSN PFDGQKILSG AMDFNPSLVS LGSRPLRDLS DSIKLTLKAE MYKWEPSRPF 600 HPSYYISIPH MSSPGSMYDP FAGQL*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MGAVGGELRS GERVEEEEDP EEEEFEEEEE VVADAQVDEE GDEVEEEAEV EELKVREEEE  60
EEVDGLEDDV SEEEEEEEEE VDGLEEDVSE GEEVEDGVDM ELQGGEEEED VDELEVEGVG  120
GAFNVDLQRA HIEEDNEEDD DPSASPIAYE EDTAESVALR TENVDCASVG EGPKKMESDY  180
GEKERSHPIN KKDVGDIDFC ALRSESKAIE TAKPICSTRS TFVVEAGDVK NEIVDRASDE  240
EGVKEMKSDN EEKEKSPPFY KRNTVDIDVY PLSSETKGTE TLTPLSTIGT EMAIKYSSEH  300
PPGMSFTPGT DTLSNMTFVA ESLNSSTVQR GEATLNHELK VEAGGKYMNL DLKEHAMPKA  360
SRVVATSRNK RSSSFSTQLM DTNKRPAIIC DYYAEGWCIK GTSCRCLHVK EDKNYTNKQL  420
ERGLASANGE KHVGEGAGYG TKSIYQEPHA ESHTRQLNVE LFLYFVKLEF SRGLVASSSA  480
FVGRFGPSSN VTEAIDYRGN QHLFNDPLQS IADRYIKQHL PPPSTAGKFS SRQISTVDGS  540
SNSAISLSSN PFDGQKILSG AMDFNPSLVS LGSRPLRDLS DSIKLTLKAE MYKWEPSRPF  600
HPSYYISIPH MSSPGSMYDP FAGQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-11	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0375s0055.1.p