PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0377s0050.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 306aa    MW: 33557.4 Da    PI: 5.8587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0377s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-102282681055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Kalax.0377s0050.1.p 228 RKRRERINERLKTLQGLVPNG-----TKVDISTMLEEAVQYVKFLQ 268
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.377218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14218283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12223280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-12227272No hitNo description
PfamPF000104.0E-8228268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEQLGGISAM YEGEWSCLSK MYNTTEESDF MAQLLGGFNP PPFAQTLGNA TRNFIDDNGG  60
FADPADDSAS SSFQLTQETS IFFPVCGEDD GEAECGANLS LSVASHPKTP EIKPVSDSAE  120
DKYVASSIKR AGKKSRNAED VSLWYVRCFV GQATDRRNVK PRKTRKSDSR SEVDKDGATN  180
NSQSSSLTCS ETGESSFSHK KSQTALNLNG RTRAGRGSAT DPQSLYARKR RERINERLKT  240
LQGLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDEMW MYAPLAYNGM EIGLFDAKNV  300
HVPPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-55bHLH family protein