PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0379s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 703aa    MW: 77210.1 Da    PI: 7.8699
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0379s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.5e-21108199187
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kalax.0379s0016.1.p 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 195
                          89****************************997556555..8***********************************************9 PP

                          E-SS CS
                   B3  84 ldgr 87 
                          ++g+
  Kalax.0379s0016.1.p 196 RTGS 199
                          6553 PP
2Auxin_resp114.21.2e-37269352183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++ +FevvY+Pra+t+eF+v ++ v++a+++++++GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Kalax.0379s0016.1.p 269 AATLATNGRPFEVVYYPRACTPEFCVAASAVRAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADPLRWPNSPWRLLQ 352
                          68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3499202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-27102204IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-19107200No hitNo description
PROSITE profilePS5086311.815108210IPR003340B3 DNA binding domain
SMARTSM010192.7E-17108205IPR003340B3 DNA binding domain
PfamPF023621.6E-19108199IPR003340B3 DNA binding domain
PfamPF065072.7E-32269352IPR010525Auxin response factor
PROSITE profilePS5174515.715588668IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MERSLDSQLW HACAGGMVQM PKVNSKVYYF PQGHAEHAQA GLDFALSPKA GPLVPCRVAS  60
VQFLADPETD EVYAKLRLVP VGNRELEFGV EDLGVYRGSE SVDKPSSFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYT ADPPVQTVIA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF  180
VNQKKLVAGD SIVFLRTGSG ELGMESESGS GIRSQSGWSP SPGHFISPYG GGGYSMFLRD  240
DENGFLRNGC GEGGLKTNKK VKGESVIEAA TLATNGRPFE VVYYPRACTP EFCVAASAVR  300
AAMRIQWCPG MRFKMPFETE DSSRISWFMG TVSSVQVADP LRWPNSPWRL LQVTWDEPDL  360
LQNVNRVSPW LVELVSNTPA MNLPPFSPPR KKLRFPPHPD FPLDGQLSLS SFSGNNLGPR  420
SSFCCVIDNT PQGIQGARHA QFGSSLSDIH FNSKLHSWLF PQSQQRLDQF PRLFNNIISS  480
SAKGNESESV SCLLSIGNSD HNVEKPKDGK KQPFVLFGQP ILTEQEISLR SESTLQALAR  540
NHSSDDHLER GKVHTSGLEL RRSLSDTSSH PGFSRLFNFA SDELSMASGR CEVFMDNDGV  600
GRTLDLSPIQ SYQQLCLKLA DLFGIGNPNA LNHALYRDAT GAIKRIGDEP FSDFRKSAKK  660
LIITVDLGKK NNGREQYLSG PEKAENGLCS SKAAAGHLSI LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79537351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A438DTG80.0A0A438DTG8_VITVI; Auxin response factor
TrEMBLF6GU140.0F6GU14_VITVI; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]