PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0379s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 167aa    MW: 18380.6 Da    PI: 4.7543
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0379s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.23.2e-5033128297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqd++lPianv+r+mk++lP nakisk+aket+qecvsefisfvt++a+dkc++ekrkt+ngdd++wal++lGf+dy++++k yl +yr
  Kalax.0379s0024.1.p  33 KEQDHLLPIANVGRMMKQILPPNAKISKEAKETMQECVSEFISFVTGDAADKCRKEKRKTLNGDDICWALGSLGFDDYAATMKRYLLRYR 122
                          79**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          ele+e+
  Kalax.0379s0024.1.p 123 ELESER 128
                          ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-4728137IPR009072Histone-fold
SuperFamilySSF471131.86E-3635141IPR009072Histone-fold
PfamPF008082.5E-2639102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-156684No hitNo description
PRINTSPR006156.7E-1585103No hitNo description
PRINTSPR006156.7E-15104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MVDNRGTNLS GRDLKLTYEG ESSGAANQEG VLKEQDHLLP IANVGRMMKQ ILPPNAKISK  60
EAKETMQECV SEFISFVTGD AADKCRKEKR KTLNGDDICW ALGSLGFDDY AATMKRYLLR  120
YRELESERAN QNRVGNNEQN DIDPPPADNP DAVSGSIAPT TINFNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4132123192Transcription factor HapC (Eurofung)
4g92_B4e-4132123192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652046.12e-68PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822481e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLF6HPZ66e-67F6HPZ6_VITVI; Uncharacterized protein
STRINGVIT_07s0104g01640.t019e-68(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]