PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0380s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 485aa    MW: 54672.2 Da    PI: 8.3391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0380s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.71.2e-28451632128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pG+rF Ptdee++v+yL+kk+++ +++  + i++ d+y+++Pw+L   ++++++ +++fF+k+          nra+k gyW+ t  d+
  Kalax.0380s0025.1.p  45 EPGYRFWPTDEEIIVHYLRKKIADPDFKS-RPIPDKDVYSFDPWELYDGAQTTTReNLFFFTKTII-----GGLNRAAKGGYWSMTIPDR 128
                          59************************999.88**************85555555515577776654.....3579*9************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++  +g   g+++ + f kg++++  kt+W+mhey++
  Kalax.0380s0025.1.p 129 LIKI-DGVWAGMRRRFEFIKGQEQS--KTSWTMHEYSV 163
                          ***9.999***********988887..*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3844181IPR003441NAC domain
PROSITE profilePS5100536.43144181IPR003441NAC domain
PfamPF023651.1E-1846163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPSYAEVLRR GSARNKKRRN NAPPPPPPPP PPPPPPGGQQ EIQSEPGYRF WPTDEEIIVH  60
YLRKKIADPD FKSRPIPDKD VYSFDPWELY DGAQTTTREN LFFFTKTIIG GLNRAAKGGY  120
WSMTIPDRLI KIDGVWAGMR RRFEFIKGQE QSKTSWTMHE YSVPGNVSQG EDWVVCRVFK  180
QPAGRPASNN DGPQLRLGSY IEPAIIPSTS SDNNQQQLNV AAQQHGQPQP VNRSSTHSDA  240
PTVDSHNQLP VNTLTTLQGP PDPTAPYSYN MVNQQLPGPN MWTFNPNFMQ PGSASPTDPW  300
FYNHNQHQWD GPTTLQGPNQ PGYTSSTHSD EQQRGWNPDQ QQQFNMAAMQ GQNQPDYRSM  360
TDSDGRKYYS HNQQNPTMPA QQGLYPYGPA HHPASYFFSP YHYNMGNQQQ PGIRPPRYLR  420
QNVSMYPDTR VVGVGGNSNS YFPRPDVGPN ASHNQRPHIR NDNQSSVPPQ GRDSDIIRPD  480
SITD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-234618119165NO APICAL MERISTEM PROTEIN
1ut4_B2e-234618119165NO APICAL MERISTEM PROTEIN
1ut7_A2e-234618119165NO APICAL MERISTEM PROTEIN
1ut7_B2e-234618119165NO APICAL MERISTEM PROTEIN
4dul_A2e-234618119165NAC domain-containing protein 19
4dul_B2e-234618119165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-28NAC domain containing protein 58