PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0380s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 436aa    MW: 48689.3 Da    PI: 9.7237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0380s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.88.8e-2361342128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdk 90 
                           pG+rF Ptdee++v+yL++k+++ +++   + ++ d+ +++P++L    k+++++++fF+k+ +++ t+  + r  k g+W+   g+++
  Kalax.0380s0027.1.p   6 EPGYRFWPTDEEIIVHYLRRKMADPHFKSRAIPDKEDMSSFDPRELYDGRKTSQEHVFFFTKKTSRQGTKLSRARLGKGGFWSyLEGTET 95 
                          59**************************96656666**********86667788999***********999999999*****96789999 PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s    ++ l+g+k t  f   ++p    t+W + ey l
  Kalax.0380s0027.1.p  96 RIYSDsegSNLLIGVKATYSFC--TNPGLIITNWNVMEYGL 134
                          **9986544455*********9..788889********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.8155150IPR003441NAC domain
SuperFamilySSF1019411.01E-296150IPR003441NAC domain
PfamPF023651.3E-137133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MESHSEPGYR FWPTDEEIIV HYLRRKMADP HFKSRAIPDK EDMSSFDPRE LYDGRKTSQE  60
HVFFFTKKTS RQGTKLSRAR LGKGGFWSYL EGTETRIYSD SEGSNLLIGV KATYSFCTNP  120
GLIITNWNVM EYGLPGNKPL DWVVCRVFTK GNGKVDPPER RPAASGSSST APTEILPHSE  180
RSRKTATTSF SAGPVASNND SSQLNFINTA LGSSSMHMYT WPAMLRQDVA SMGTVYRSQE  240
HSGERRGYTL NQPQLNMATQ QQQRRRPRPV NTHSDEQWQP VNMPSTSLQG PRGPAHPAST  300
MVSTTPYRYS MVNQQQLPRP NLQLDIGSII DSGTLGWTFN PNFTQPFGMP ILQGQYQPAY  360
PANNYNMENQ QLPGITTPPI LPPDVPVGGN FNPNLTQPDC GSSSSRNRRP RSGNYDQSSV  420
PPQGSDSQPS KYRKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-21NAC domain containing protein 58