PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0380s0037.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 651aa    MW: 71219.8 Da    PI: 5.0184
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0380s0037.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.65.5e-0551111755
                          --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
             Homeobox   7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 
                          f++ ++ e+e+  +  +n+ p +e    +A+k            ++++q+ +WFqN+R+  
  Kalax.0380s0037.2.p  51 FNSAEVLEMETILQdhNNMMPAREVLVSIADKFsnsperrgkfVVQTKQIWNWFQNKRYAI 111
                          6666677777777733488888888888888888888888888899************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.91E-849114IPR009057Homeodomain-like
CDDcd000860.0093250112No hitNo description
Gene3DG3DSA:1.10.10.601.0E-450117IPR009057Homeodomain-like
PROSITE profilePS500718.61650114IPR001356Homeobox domain
PfamPF167191.3E-40195321IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MKAGFGFFST WNFETLNNKQ RIDFGCGAWS ENILESGMGR PPSNGGPAFR FNSAEVLEME  60
TILQDHNNMM PAREVLVSIA DKFSNSPERR GKFVVQTKQI WNWFQNKRYA IRARTSKTPT  120
KLIVSSMQPT STIAPLHAVP VISTMPAVQA KPTVPVAPSA QAIPVVTRED NFSSSGLPQS  180
MAAPPGRSSA DNIPMEFEAR SARDGAWYDV TAFLSLKNLE AGDPEVLVRF AGFGPEEDEW  240
INVRKHVRHR SLPCESSECV AVLPGDLILC FQEGKEQALY FDAHVLDAQR RRHDVRGCRC  300
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAMNESS AEHRKSTSST EQHKSTSSTE  360
QHKSVSSVEQ IKSHIDSPFP KAGICNFSAL STQKALAPNL HVNVSEISEE HKGATDCSSD  420
KTIGDTNIAP SSTQHSLSEV INLDPEIEVE RNTHEVKDVT DDMAVDEKNI HEVKGANDDM  480
AVDEPLEKQF LTVEETDAIP ICGIDATTKT CLTVVKPSSE MNGTTSQNAT QVLKKEVSVA  540
TGTGNVPVAG GHDPELMMVE RNSTTDEGLA KFDPIKADLT SSTDLNLTRE MKIPETSLLA  600
GAEVISADSS IPAVKSSEIT NITLESGVPD EGGVTHEVKT DVDLANANPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-451893251134SHH1 SAWADEE
4iur_B3e-451893251134SHH1 SAWADEE
4iut_A3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-451893251134SAWADEE HOMEODOMAIN HOMOLOG 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-124sequence-specific DNA binding transcription factors;sequence-specific DNA binding