PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0385s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 362aa    MW: 42786.2 Da    PI: 6.0612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0385s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.5e-5671361129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv++yL+kkv+++++el +vik++d+yk+ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Kalax.0385s0005.1.p   7 VPPGFRFHPTDEELVDYYLRKKVNSRPIEL-DVIKDIDLYKIEPWDLQElcRLGTeDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 95 
                          69****************************.9***************954544442556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk+++  k+el+g++ktLvfykgrap+g+k+dW+mheyrle
  Kalax.0385s0005.1.p  96 RDKAIYL-KQELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                          *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-615156IPR003441NAC domain
PROSITE profilePS5100560.1077156IPR003441NAC domain
PfamPF023656.2E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNTFSQVPPG FRFHPTDEEL VDYYLRKKVN SRPIELDVIK DIDLYKIEPW DLQELCRLGT  60
EDQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YLKQELIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLESDEN GSPQEEGWAV CRVFKKKMTT VRRMNEHESP CWFDDQVSYM  180
PNLDNSPNQT ISYQHGHPWY PCKKEADQHH HQPHHQYHPR MHYNQNPHDN FLHLPHLDAP  240
NKPNPNNMSF DNNAMMLGPF EDHHMQHIGS HEHGHSLYQY SNTHDQQTMA TTDWKMLDKY  300
VASQLSHEDL ISDENNNDDY SNAENEMFHL SGDHEGLHEE DDTIVSDPMQ QDLEHQKCMP  360
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-49716017169NO APICAL MERISTEM PROTEIN
1ut4_B3e-49716017169NO APICAL MERISTEM PROTEIN
1ut7_A3e-49716017169NO APICAL MERISTEM PROTEIN
1ut7_B3e-49716017169NO APICAL MERISTEM PROTEIN
4dul_A3e-49716017169NAC domain-containing protein 19
4dul_B3e-49716017169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038408.21e-144PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-125NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1R3JTM01e-147A0A1R3JTM0_9ROSI; No apical meristem (NAM) protein
STRINGEOY229091e-144(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-115NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]