PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0388s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 309aa    MW: 34086.6 Da    PI: 8.5617
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0388s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.4e-312275255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtpeLH +Fv+a+++LGG+ kAtPk +l+lm+v gLt++hvkSHLQ+YR+
  Kalax.0388s0044.1.p 22 PRLRWTPELHCCFVQAIHRLGGQAKATPKLVLQLMEVRGLTISHVKSHLQMYRS 75
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-301879IPR009057Homeodomain-like
PROSITE profilePS5129411.5151878IPR017930Myb domain
SuperFamilySSF466897.17E-152077IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-232276IPR006447Myb domain, plants
PfamPF002491.8E-82374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVSCGRNGGG RGVRQYVRSK VPRLRWTPEL HCCFVQAIHR LGGQAKATPK LVLQLMEVRG  60
LTISHVKSHL QMYRSMKSHL RRQDLNSSHT GKHSFEDHDG NGDVDEEQDD DYHQMNLHHH  120
FLKPTSESDP HFIYSKSVYC INSPKRARIG MSGARSVSEK DTRVVVVHDH RRAGGIIYDT  180
VIPAAAARPL TSSFSMLLSQ NHYNSTINAP LGFPVKESDF LQVVKKVGRN GCERRMICKA  240
ETGDDDPMGT SLSLSLVHPS TNGSVMCSTS EASETVLSSL PTYSKGCSNF FIDQCSVNLD  300
LSIALCGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182377357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281928.14e-68PREDICTED: myb family transcription factor APL
TrEMBLA0A438CWL09e-67A0A438CWL0_VITVI; Putative Myb family transcription factor
TrEMBLD7SMG81e-66D7SMG8_VITVI; Uncharacterized protein
STRINGVIT_01s0137g00050.t012e-67(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-31G2-like family protein