PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0388s0045.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 200aa MW: 22500.3 Da PI: 7.8206

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0388s0045.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7e-32	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+ Kalax.0388s0045.2.p 23 PRLRWTPELHSCFVQAIDKLGGQEKATPKLLLQVMDVRGLTISHVKSHLQMYRS 76 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-30	19	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.534	19	79	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-15	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MVSCGRGGGA GGGVRQYVRS KVPRLRWTPE LHSCFVQAID KLGGQEKATP KLLLQVMDVR 60 GLTISHVKSH LQMYRSIKSD LSRQVNLNSS DTSKQSFEDH DGDGDADEEQ DDDHNKMTLH 120 HHPSKPTSES DSHFVYNNSV DCINPPKRSV CSQTLTYIRQ SNKSNGEASC NYSLPLYCLF 180 TMCFAILPKY IIYFWSQYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080007.1	2e-50	putative Myb family transcription factor At1g14600 isoform X2
Refseq	XP_028117629.1	6e-50	uncharacterized protein LOC114315240
TrEMBL	A0A1R3HQS3	5e-48	A0A1R3HQS3_9ROSI; Uncharacterized protein
TrEMBL	A0A438CWL0	7e-48	A0A438CWL0_VITVI; Putative Myb family transcription factor
TrEMBL	D7SMG8	7e-48	D7SMG8_VITVI; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	1e-48	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0388s0045.2.p