PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0389s0021.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 323aa MW: 35372.8 Da PI: 8.2686

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0389s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.5	6.5e-13	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++ +v+a +++ + Wk+I + +g +t q++s+ qky Kalax.0389s0021.1.p 58 RESWTDMEHDMFVEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 102 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-15	53	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.594	53	107	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.8E-17	56	105	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.1E-6	56	108	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-10	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-10	58	102	IPR001005	SANT/Myb domain
CDD	cd00167	9.46E-8	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVSVHPNSTK AQSGSAYFHT MDASLPGLNN SLQPQPPPMD PDDSSKKVRK PYVISKSRES 60 WTDMEHDMFV EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG MTEHVPPPRP 120 KRKAAHPYPQ KASKIAHADS QFAGSVQPTA PKVHPGYALP GLNSISSSST EFSSWTHSSA 180 PPLDMSHISK NGGELLGATG AGNFGCSSSN ESSSRTWCAN VSNEQGNSSM PIRFMPDFAQ 240 VYNFIGSVFD PDTSGHLQKL KTMDPINVET ALLLMRNLAI NLTSPEFEDH RQLLESYDVL 300 PGKGKAFDNM YPGIHQSAIS TS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261345.1	1e-122	PREDICTED: protein REVEILLE 6 isoform X2
Swissprot	Q8H0W3	5e-91	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A1U8A8B1	1e-120	A0A1U8A8B1_NELNU; protein REVEILLE 6 isoform X2
STRING	VIT_15s0046g02260.t01	1e-120	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	9e-75	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0389s0021.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]