PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0390s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 100aa    MW: 11201 Da    PI: 11.114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0390s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151865249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          i++ s+r vt++kRr+g++KK e L +L++ ++a i+fs+ g+ y++
  Kalax.0390s0011.1.p 18 AIQDMSRRRVTLTKRRQGLFKKMEKLRTLTGCKAAAIVFSTAGRPYTF 65
                         6999******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-17968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.035969IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-171072IPR002100Transcription factor, MADS-box
CDDcd001202.62E-181066No hitNo description
PRINTSPR004046.4E-131131IPR002100Transcription factor, MADS-box
PfamPF003191.6E-171965IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-133146IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-134667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MQKQARLGTG RKRIQIQAIQ DMSRRRVTLT KRRQGLFKKM EKLRTLTGCK AAAIVFSTAG  60
RPYTFGDLSL FDSFSCAGEG EGVSTLHYEF RVRCFGEFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026420004.13e-17agamous-like MADS-box protein AGL61
TrEMBLA0A2G2W7Q06e-16A0A2G2W7Q0_CAPBA; Agamous-like MADS-box protein AGL21
STRINGXP_009603478.13e-16(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-15AGAMOUS-like 29