PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0395s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 231aa MW: 25950.8 Da PI: 6.7778

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0395s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.9	1.6e-26	127	185	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+ k++++ r+YY+Cts gC+vkk ver ed ++v++ Y g H+he Kalax.0395s0010.1.p 127 LDDGYRWRKYGKKPLKNNPNLRNYYKCTSGGCQVKKIVERWIEDSSYVITQYDGVHTHE 185 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-28	114	186	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-25	120	185	IPR003657	WRKY domain
PROSITE profile	PS50811	26.968	122	187	IPR003657	WRKY domain
SMART	SM00774	8.4E-30	127	186	IPR003657	WRKY domain
Pfam	PF03106	5.7E-20	128	185	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDLYSLENPN PSLDLYIDVD DYSLSQFDCF FLNELSNYEA GYGFIGGAEK DQSSYTSSPA 60 VTSPPEKVSR SEQDPLLLVQ MLVSGGASSS TNAAVNVMRN EGKRKMKGDG PKPQRVAFKT 120 KSKLDVLDDG YRWRKYGKKP LKNNPNLRNY YKCTSGGCQV KKIVERWIED SSYVITQYDG 180 VHTHESSCSY YYDNNNNHHL QGVTATDYYH CQNDANTYIP SAAETKVHLK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-21	117	185	7	75	Probable WRKY transcription factor 4
2lex_A	8e-21	117	185	7	75	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93WU9	1e-34	WRK51_ARATH; Probable WRKY transcription factor 51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-24	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Kalax.0395s0010.1.p

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]