PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0395s0038.10.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 341aa    MW: 37495.2 Da    PI: 7.1891
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0395s0038.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15176213441
                   TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            +C+Ckks+Clk+YC+Cfa g +C+ +C C +C Nk++
  Kalax.0395s0038.10.p 176 IRCKCKKSECLKLYCDCFALGMFCGTSCACINCWNKSD 213
                           68*********************************986 PP
2TCR39.21.4e-12239276239
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           +++gCnCk+skC+k+YCeC++a++ C + C+C++C N 
  Kalax.0395s0038.10.p 239 KTRGCNCKRSKCVKNYCECYQANAGCCQGCHCHGCTNP 276
                           689*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-13173214IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.337174278IPR005172CRC domain
PfamPF036388.3E-12177211IPR005172CRC domain
SMARTSM011144.1E-11238279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.1E-9241275IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTDVVSSTNS WDYNLPGVSL YQSGLIGGSM SDNLYAQGMM SQQYEMEDSG SGYQQQALNI  60
SLCEPGHFDS DLPRSGNFSR NLHFLLPSTS PYGVQLPNTN FLNNINSAAL ETITPNRDPP  120
GRLSVQLPNI YVDVVVGQTS ALATNITPAE LLLSPSSAYN NHRRSFSSSN INVEEIRCKC  180
KKSECLKLYC DCFALGMFCG TSCACINCWN KSDYEDSIQT ARDQIQVRNP HAFESRVNKT  240
RGCNCKRSKC VKNYCECYQA NAGCCQGCHC HGCTNPYGSR PASIYRIPEG LNAANLNTAL  300
TGLPGDIEFI RSRDIQFFIW YGGKWSSACV KILGILSSWV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1517827514120Protein lin-54 homolog
5fd3_B1e-1517827514120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-29Tesmin/TSO1-like CXC domain-containing protein