PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0395s0038.6.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 357aa    MW: 39046.2 Da    PI: 4.5246
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0395s0038.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-15250287441
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           +C+Ckks+Clk+YC+Cfa g +C+ +C C +C Nk++
  Kalax.0395s0038.6.p 250 IRCKCKKSECLKLYCDCFALGMFCGTSCACINCWNKSD 287
                          68*********************************986 PP
2TCR39.11.5e-12313350239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +++gCnCk+skC+k+YCeC++a++ C + C+C++C N 
  Kalax.0395s0038.6.p 313 KTRGCNCKRSKCVKNYCECYQANAGCCQGCHCHGCTNP 350
                          689*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-13247288IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.337248352IPR005172CRC domain
PfamPF036388.8E-12251285IPR005172CRC domain
SMARTSM011144.1E-11312353IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-9315349IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLTKVSSENA AAETDENADD PILERNGVDG EELTKERGES LKDAEQLFEA DFPGFTIDDD  60
FPGWSSASNT DQVGMTDVVS STNSWDYNLP GVSLYQSGLI GGSMSDNLYA QGMMSQQYEM  120
EDSGSGYQQQ ALNISLCEPG HFDSDLPRSG NFSRNLHFLL PSTSPYGVQL PNTNFLNNIN  180
SAALETITPN RDPPGRLSVQ LPNIYVDVVV GQTSALATNI TPAELLLSPS SAYNNHRRSF  240
SSSNINVEEI RCKCKKSECL KLYCDCFALG MFCGTSCACI NCWNKSDYED SIQTARDQIQ  300
VRNPHAFESR VNKTRGCNCK RSKCVKNYCE CYQANAGCCQ GCHCHGCTNP YGSRPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1625234914120Protein lin-54 homolog
5fd3_B8e-1625234914120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.16e-29Tesmin/TSO1-like CXC domain-containing protein