PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0397s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 108aa    MW: 12024.4 Da    PI: 3.9408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0397s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-0724511746
                         HHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +q    +W++Ia ++g g+++k++ +++q 
  Kalax.0397s0025.1.p 24 EQVAD-RWDKIATMVG-GKSAKEVEDHYQA 51
                         44444.5*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.028153IPR017877Myb-like domain
SuperFamilySSF466892.17E-9561IPR009057Homeodomain-like
CDDcd001673.06E-5653No hitNo description
Gene3DG3DSA:1.10.10.604.8E-41854IPR009057Homeodomain-like
PfamPF002498.1E-62251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MLKDEAWSWE KNKKFELALL DVNEQVADRW DKIATMVGGK SAKEVEDHYQ ALVQDVNLIE  60
SGLFDDDDEL NELGEPQIIQ KSAITPPLGL CFLSVEIDSH QGCDCDS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281797.17e-18PREDICTED: protein RADIALIS-like 4
SwissprotQ6NNN05e-14RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A438BNG64e-16A0A438BNG6_VITVI; Transcription factor RADIALIS
TrEMBLA0A443PWL94e-16A0A443PWL9_9MAGN; Protein RADIALIS-like protein 4
TrEMBLA5ATJ85e-16A5ATJ8_VITVI; Uncharacterized protein
STRINGVIT_07s0005g02730.t019e-17(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.12e-15RAD-like 4