PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0411s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 305aa MW: 34158 Da PI: 7.036

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0411s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.9	1.8e-34	10	101	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F++k+y+++ d++++ li w +++nsf+v+++ +f++++Lp yFkh++f+SFvRQLn+YgFkkv+ ++ weF++++F +g+k Kalax.0411s0006.1.p 10 FIMKTYQMVTDPATDGLIAWGKSSNSFIVSNHLDFSQRILPAYFKHNSFSSFVRQLNTYGFKKVDPDR---------WEFANEWFLRGQK 90 9**************************************************************999.........********* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i r+++ Kalax.0411s0006.1.p 91 HLLKNIVRRRH 101 *****9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.5E-50	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.04E-32	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	9.5E-36	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.7E-17	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.8E-29	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-17	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-17	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDANSVIPPF IMKTYQMVTD PATDGLIAWG KSSNSFIVSN HLDFSQRILP AYFKHNSFSS 60 FVRQLNTYGF KKVDPDRWEF ANEWFLRGQK HLLKNIVRRR HGRSLSGPFQ YAKDEEDEEE 120 EDILLEISRL KEEQKSLEQQ VKDMNRRLQA TERRPQQMLS FIHKVVEDPE LLSRIMLEKE 180 KTYHADKARR LIKTASFSSS SSAAATASTN SVKTEDDDEG GLGSNSSPET LCRRSPSLPA 240 WWNQSGNGFG SVHPGDGSGK PFASAEDDGF GSVRVGFVSS GSGADHVDGR SPPHYPFTLF 300 RGGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-25	1	99	11	120	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324418.2	1e-103	heat stress transcription factor C-1
Swissprot	Q9LV52	1e-83	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	B9ILM2	1e-102	B9ILM2_POPTR; Uncharacterized protein
STRING	cassava4.1_010201m	1e-102	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	5e-79	heat shock transcription factor C1

Link Out ? help Back to Top
Phytozome	Kalax.0411s0006.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]