PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0413s0031.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 166aa MW: 18938.1 Da PI: 10.2791

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0413s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.4	1.2e-10	11	60	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51 i + s r +tf kR++ +KK +EL LC+++v+ i + +gk+ ++s Kalax.0413s0031.1.p 11 IPSISARITTFRKRKKSFFKKLNELKKLCEVDVCAFIKNPfDGKMEAWPS 60 5667889***************************8887665899998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.091	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-7	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-17	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-12	13	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MARRGIKLEL IPSISARITT FRKRKKSFFK KLNELKKLCE VDVCAFIKNP FDGKMEAWPS 60 DPEAKSVAER FKNALAAKKK RYGMNQESYL RKTIENFANK LEKQEKKNDD LVFDMMVNGF 120 GIEQAGLDNP EDLRRALGKK IKEVDEKIDH MSIDLNKIPS GSPLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	25	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-14	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Kalax.0413s0031.1.p