PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0415s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 307aa    MW: 34364.4 Da    PI: 6.0531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0415s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-134585345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +++ eE+   +++ +++G++ W++Ia +++ gRt++++k++w 
  Kalax.0415s0009.1.p 45 KFSLEEERVVIELQEEFGNK-WARIATYLP-GRTDNDVKNFWS 85
                         799*****************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.922136IPR017930Myb domain
SuperFamilySSF466899.38E-21284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-11243IPR009057Homeodomain-like
SMARTSM0071737238IPR001005SANT/Myb domain
CDDcd001675.10E-6436No hitNo description
PROSITE profilePS5129419.6143792IPR017930Myb domain
SMARTSM007171.5E-124290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-184490IPR009057Homeodomain-like
PfamPF002498.9E-124585IPR001005SANT/Myb domain
CDDcd001671.37E-104584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNHVNRYGPR DWSSIRSKGL LRRTGKSCRL RWVNKLRPNL KNGCKFSLEE ERVVIELQEE  60
FGNKWARIAT YLPGRTDNDV KNFWSSRKKR LARMLQPKHT APSSSPPAKP RKQSNTGDTL  120
QYARACNLVP KPVDFVLEAK LIKHVVVIVV VAVVDKFANE ASSSTLVDEQ PWYVDQMSDM  180
LPPPPPGLML INYNPSMLPL EMMMAPDQKT MSVDCPAAEF PIQVPFAPQV MPVPLSPESQ  240
ELVALLENGC LGTEGVEAEL RFLDDVPPHN CDVGGDNSLP PPDSFFDDFP ADMFDHIESL  300
PSPSNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2019039126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGVIT_15s0021g02040.t011e-72(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-51MYB family protein