PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0415s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 292aa MW: 31829.7 Da PI: 7.4694

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0415s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.5e-19	117	171	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq +Lee+F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k Kalax.0415s0018.1.p 117 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTK 171 678899***********************************************98 PP
2	HD-ZIP_I/II	124.8	3.9e-40	117	206	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Kalax.0415s0018.1.p 117 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 205 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kalax.0415s0018.1.p 206 L 206 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	3.5E-10	4	87	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	5.4E-18	97	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-18	110	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	113	173	IPR001356	Homeobox domain
SMART	SM00389	6.1E-16	115	177	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-16	117	171	IPR001356	Homeobox domain
CDD	cd00086	3.72E-15	117	174	No hit	No description
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.4E-11	173	207	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.9E-26	173	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAGDDGLELS LTLKCPGSQS NHSPPPPQQQ TPWHELFQPI DRSAYLRRGV ALVAAIPVVD 60 LADDEIDVSS PNDSTVSSLS GKRSDREANN VNVNGDENEA ERASSSGKMS DEEDGGRKKL 120 RLTREQSAVL EEMFKEHNTL NPKQKVALAK QLDLRTRQVE VWFQNRRART KLKQTEVDCE 180 YLKRCCENLT EENRRLQKEV QELRALKLSP QMYMQINPAT TLTMCPSCER VSSSAAAAAA 240 AAAAGGGSGH VAVGAGANGV RVNNAVGSQV QQPTIQMNSP WAPLPVHHRK L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	173	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955133.1	2e-98	homeobox-leucine zipper protein ATHB-4 isoform X2
Swissprot	P46602	3e-83	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	V4U3L9	4e-97	V4U3L9_9ROSI; Uncharacterized protein
STRING	XP_006464444.1	2e-97	(Citrus sinensis)
STRING	XP_006445396.1	2e-97	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-83	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Kalax.0415s0018.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]