PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0415s0018.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 258aa    MW: 28095.7 Da    PI: 8.375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0415s0018.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.27e-1983137256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++t+eq  +Lee+F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Kalax.0415s0018.2.p  83 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTK 137
                          678899***********************************************98 PP
2HD-ZIP_I/II125.23e-4083172191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl++eq+++LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Kalax.0415s0018.2.p  83 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 171
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.0415s0018.2.p 172 L 172
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.5E-72253IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.2E-1863137IPR009057Homeodomain-like
SuperFamilySSF466892.95E-1876140IPR009057Homeodomain-like
PROSITE profilePS5007117.03879139IPR001356Homeobox domain
SMARTSM003896.1E-1681143IPR001356Homeobox domain
PfamPF000462.4E-1683137IPR001356Homeobox domain
CDDcd000863.73E-1583140No hitNo description
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PfamPF021832.0E-11139173IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.9E-26139182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVILCADRSA YLRRGVALVA AIPVVDLADD EIDVSSPNDS TVSSLSGKRS DREANNVNVN  60
GDENEAERAS SSGKMSDEED GGRKKLRLTR EQSAVLEEMF KEHNTLNPKQ KVALAKQLDL  120
RTRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCENLTEENR RLQKEVQELR ALKLSPQMYM  180
QINPATTLTM CPSCERVSSS AAAAAAAAAA GGGSGHVAVG AGANGVRVNN AVGSQVQQPT  240
IQMNSPWAPL PVHHRKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368991.16e-92homeobox-leucine zipper protein HAT4
SwissprotP466025e-80HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A200Q2L98e-94A0A200Q2L9_9MAGN; Homeobox domain
STRINGPOPTR_0001s15490.12e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-81homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]