PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0420s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 344aa    MW: 38150.6 Da    PI: 5.7436
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0420s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.68.7e-2892173271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Kalax.0420s0019.1.p  92 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpaislapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173
                          789********...*****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.1E-1265343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.4E-4687178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.5E-3591173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-2593173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.35E-2194174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.59E-41178281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-44179301No hitNo description
SMARTSM011387.2E-63180341IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-41181297IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVFGQENGDR NPASISRGGG VTRSWGTTVS GGQSVSTSGS VGSPTRSEQA ATTPVSESTF  60
VRLNHLDIHA DDADAQGKKK KRGQRAVGGD KNGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPA ISLAPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTTLN  180
DVEELKVERM ALRNKIEKKA AYLQELEEQY VGLQNLIQRN EQLFSSENAP SQGVQLPFIL  240
VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MNFCQRSQID ACDAENNFPI  300
DAGEGCSITN VYQPEIQQQP SRSSTPGRPP TPGIIKARVK PEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-4085175190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-148DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7YP910.0A0A1U7YP91_NELNU; transcription factor-like protein DPB
STRINGXP_010241817.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-125Transcription factor DP