PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0420s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 491aa    MW: 54427 Da    PI: 4.7843
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0420s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.1e-34561472102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++l+ +isw ++g+sfvv+d+ +f++ vLp+ Fkh+nf+SFvRQLn+Y F+k+++++         weF++k F +gkk
  Kalax.0420s0036.1.p  56 FLSKTYDLVDDPALDGIISWGATGESFVVWDPVDFSRVVLPRNFKHNNFSSFVRQLNTYRFRKIDTDK---------WEFANKGFVRGKK 136
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+ks
  Kalax.0420s0036.1.p 137 HLLKSIQRRKS 147
                          *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3351145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5452145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.8E-3653145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-165679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3056145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1694106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGLSGSGSSA EEYEMKPELG GDEVSVVAPL TIGIPARGEG LPQPLESLQG SPVPPFLSKT  60
YDLVDDPALD GIISWGATGE SFVVWDPVDF SRVVLPRNFK HNNFSSFVRQ LNTYRFRKID  120
TDKWEFANKG FVRGKKHLLK SIQRRKSPQS QQGFNFGVSA EAGRPGLEDE LERLRLERKM  180
LMHEVAELQI EQDGTAHHME LVNQRIQAAE KKQKQMVTFL SKLFHNPAFL ARLQSKKEHG  240
QIESPKVKRK FVTNQPHVAG KSGLDSKNET AKRGVRDQYK LSELPIMPNS TSISNPELPG  300
YLLEDMVANM DNDGRNIPLR VEDILVAEVP TSVEQAELEG FITTPEAFGE AFKDSKIRDK  360
GKGKVGSLDS FSPDYLVSFP EDMGMEKAIH GLSTSRTESI PEQEDDWRSM GFDANPVMPS  420
PSYGVWDNVA DYSMPDFGGS SSFSDVWEFG SPQAAGCAGL DLGSPDECNF DELDVRVDHA  480
GDDISKYMDR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22331456129Heat shock factor protein 1
5d5v_B1e-22331456129Heat shock factor protein 1
5d5v_D1e-22331456129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609890.11e-140PREDICTED: heat stress transcription factor A-3
TrEMBLA0A314XZ371e-141A0A314XZ37_PRUYE; Heat stress transcription factor A-3 isoform X1
STRINGGorai.006G158000.11e-139(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-85heat shock transcription factor A3