PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0421s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20106.2 Da    PI: 10.0465
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0421s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-1558107149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
               SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49 
                          krie+  +r++tfskRr g++KKAeELS L++   a + fs+t  kl+ +
  Kalax.0421s0018.1.p  58 KRIEDLNKRYITFSKRRPGLFKKAEELSELTGCGMAALAFSPTAkKLHKF 107
                          79***************************************985156665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-1850110IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.37150102IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-1751108IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-115272IPR002100Transcription factor, MADS-box
PfamPF003195.5E-1759107IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-117287IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKCVKEATQS CPAATKNLND LEVKSRTANP KTTIQKQTAF IQRATTMGGT GKKKIEIKRI  60
EDLNKRYITF SKRRPGLFKK AEELSELTGC GMAALAFSPT AKKLHKFGEM ALIDRYLEDT  120
GAGQGQVALG WESGNQNEVS VEAALRFLAG KNLGAIYDLG ELVEMRSVLG RIRECLLQHL  180
NSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-14AGAMOUS-like 71