PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0422s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 369aa    MW: 41532.6 Da    PI: 8.533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0422s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5381321127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL++k+++  +++ ++i+ vd++k+ePwdLp  ++ +e+ewyfF  +d+ky+tg r+nrat++gyWk+tgkdk
  Kalax.0422s0023.1.p   8 LPPGFRFHPTDEELVTYYLNNKIADCGFTC-RAITAVDLNKCEPWDLPVLASMGEREWYFFNLKDRKYPTGLRTNRATQAGYWKTTGKDK 96 
                          79**************************99.89***************8777899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          e+++ +g  vglkktLvfy+grapkgek++Wvmheyr
  Kalax.0422s0023.1.p  97 EIYK-GGVIVGLKKTLVFYRGRAPKGEKSNWVMHEYR 132
                          ***9.*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-625154IPR003441NAC domain
PROSITE profilePS5100557.6228154IPR003441NAC domain
PfamPF023658.0E-289132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNCMEEYLPP GFRFHPTDEE LVTYYLNNKI ADCGFTCRAI TAVDLNKCEP WDLPVLASMG  60
EREWYFFNLK DRKYPTGLRT NRATQAGYWK TTGKDKEIYK GGVIVGLKKT LVFYRGRAPK  120
GEKSNWVMHE YRPEAKPTFK SNKDEWVVCR VFKKSSSTAK KPPHTPSSSS QRYTALDDSL  180
TPTNIATHDF GETIEIPNHN VPNGGSSTRS YDSSADHQLS NMIQPQNQYN ISSMNMKMDF  240
DWAMSKQTSA QAVNITRLLT DHNDQSLQRN AVTSTCSSPN MAFNSLLLKA LQLRSYQPGP  300
LINPSLMTSI ENFSALNTPG QQLARNVTSS FGTDYNSNML APSSSSSNRQ LQVQDQVQEQ  360
AFSMDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53816017171NO APICAL MERISTEM PROTEIN
1ut4_B3e-53816017171NO APICAL MERISTEM PROTEIN
1ut7_A3e-53816017171NO APICAL MERISTEM PROTEIN
1ut7_B3e-53816017171NO APICAL MERISTEM PROTEIN
3swm_A3e-53816020174NAC domain-containing protein 19
3swm_B3e-53816020174NAC domain-containing protein 19
3swm_C3e-53816020174NAC domain-containing protein 19
3swm_D3e-53816020174NAC domain-containing protein 19
3swp_A3e-53816020174NAC domain-containing protein 19
3swp_B3e-53816020174NAC domain-containing protein 19
3swp_C3e-53816020174NAC domain-containing protein 19
3swp_D3e-53816020174NAC domain-containing protein 19
4dul_A3e-53816017171NAC domain-containing protein 19
4dul_B3e-53816017171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774834.11e-111NAC domain-containing protein 100-like
TrEMBLB9IE381e-105B9IE38_POPTR; Uncharacterized protein
STRINGXP_006485794.11e-105(Citrus sinensis)
STRINGPOPTR_0015s03700.11e-106(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-96NAC domain containing protein 58