PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0423s0006.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 828aa MW: 92141 Da PI: 4.432

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0423s0006.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.3e-10	680	722	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + el++++++q+G++ +++I + ++ gRt+ q+k+++ k Kalax.0423s0006.3.p 680 ASWSKLDTELFYQGIRQFGTD-FALIQQLFP-GRTRHQIKLKYKK 722 58*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	7.0E-28	672	756	No hit	No description
SuperFamily	SSF46689	6.13E-10	673	724	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.498	677	725	IPR017884	SANT domain
SMART	SM00717	4.1E-9	678	726	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-6	679	722	IPR009057	Homeodomain-like
CDD	cd00167	2.49E-7	681	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MDFDDLDPFD DFLEVPTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS 60 LPQESSSDAT HMGVASAAKS VGQPDSLNNV EEQHSGISLV QQVPVSPEPL SHLPRHDDGC 120 SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYEDV VTGGNRGLNC DYYEEPPAES 180 ASLQCNQFDD VDPEQSISTA RDGGEFRPKL KSRPVKQTLS SAKSGLTGTM NENHVEISSD 240 AFDSNRQENL GGADVSGNNN IPEGSLQDRV PLDDSRRFEM ENSSSINVVL DDLQFDVTTI 300 ESFRPQSRSS PDKSLNSSRD VFMGDRIIES YQFDNREIPC SIIMVDQGNP HSFVDQGSNT 360 CDSSQAQSMF GVTGNQNEIS IRDSTTSMIT KPSDIDSGRM EPEHRESIDN GSLYDPSISG 420 FPLADDYFSI NEPFTCGSEI GQSGASLPDN GMHVEATHEI PVERVDDSAA PEGTGTRQPA 480 RVLRKRKARS TRPAESVDCE TDSIHGELHS EFDRNQDEDY NEGNTKQKKK GVQRSRKSAP 540 ESDQPNRSRK KVKDASSEQQ EKPKKKFSHS TRGRRKRVDP TLLATPDDEI DHRSCSFRDL 600 ILRAEFLERD SKKVSTPSSA PATNQRTESP SPWDQPYNER SNFDSDQHGE YDDYEDDNIE 660 VQESSSYFNY HSYMTKTPRA SWSKLDTELF YQGIRQFGTD FALIQQLFPG RTRHQIKLKY 720 KKEERQHPQR VSEAIENRAK GISYFQQVIE QLKATDTQAD QELGEDPNEV EDYADDVLEE 780 NAELNDNGST RLELGDVVAK DDAEDTTEVS EKMDEDDDYG LGSYVGL*

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MDFDDLDPFD DFLEVPTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS  60
LPQESSSDAT HMGVASAAKS VGQPDSLNNV EEQHSGISLV QQVPVSPEPL SHLPRHDDGC  120
SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYEDV VTGGNRGLNC DYYEEPPAES  180
ASLQCNQFDD VDPEQSISTA RDGGEFRPKL KSRPVKQTLS SAKSGLTGTM NENHVEISSD  240
AFDSNRQENL GGADVSGNNN IPEGSLQDRV PLDDSRRFEM ENSSSINVVL DDLQFDVTTI  300
ESFRPQSRSS PDKSLNSSRD VFMGDRIIES YQFDNREIPC SIIMVDQGNP HSFVDQGSNT  360
CDSSQAQSMF GVTGNQNEIS IRDSTTSMIT KPSDIDSGRM EPEHRESIDN GSLYDPSISG  420
FPLADDYFSI NEPFTCGSEI GQSGASLPDN GMHVEATHEI PVERVDDSAA PEGTGTRQPA  480
RVLRKRKARS TRPAESVDCE TDSIHGELHS EFDRNQDEDY NEGNTKQKKK GVQRSRKSAP  540
ESDQPNRSRK KVKDASSEQQ EKPKKKFSHS TRGRRKRVDP TLLATPDDEI DHRSCSFRDL  600
ILRAEFLERD SKKVSTPSSA PATNQRTESP SPWDQPYNER SNFDSDQHGE YDDYEDDNIE  660
VQESSSYFNY HSYMTKTPRA SWSKLDTELF YQGIRQFGTD FALIQQLFPG RTRHQIKLKY  720
KKEERQHPQR VSEAIENRAK GISYFQQVIE QLKATDTQAD QELGEDPNEV EDYADDVLEE  780
NAELNDNGST RLELGDVVAK DDAEDTTEVS EKMDEDDDYG LGSYVGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0423s0006.3.p