PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0424s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 185aa    MW: 19914.3 Da    PI: 4.5706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0424s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.6e-151764355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr  ++ g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Kalax.0424s0012.1.p 17 YRGVR--SRGGKWVCEIREPRK---TSRIWLGTFPRPEMAAAAYDVAAIALKG 64
                         9***6..679*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5721672IPR001471AP2/ERF domain
SMARTSM003809.8E-271678IPR001471AP2/ERF domain
PfamPF008471.1E-81764IPR001471AP2/ERF domain
PRINTSPR003673.2E-71728IPR001471AP2/ERF domain
CDDcd000185.55E-151774No hitNo description
SuperFamilySSF541715.69E-181774IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-271774IPR001471AP2/ERF domain
PRINTSPR003673.2E-75474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAAPNGAPCK PDQPFSYRGV RSRGGKWVCE IREPRKTSRI WLGTFPRPEM AAAAYDVAAI  60
ALKGKEAILN FPDSARSYPV PVTSSPADIR VAAAAAAAKK QEETSSSSSQ VDDKASTKTD  120
NEEDLTTTLS LSKKSGDQYV DDEEIFEMPS LLVGMAEGMM ISPPRMEEPD NNAEGGSQSL  180
WSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1317721572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023521236.17e-57ethylene-responsive transcription factor ERF026-like
RefseqXP_023521505.17e-57ethylene-responsive transcription factor ERF026-like
RefseqXP_023532975.17e-57ethylene-responsive transcription factor ERF026-like
TrEMBLB9GW616e-52B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.11e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-34ERF family protein